https://www.vandijklab.org/news daily 0.75 2025-12-08 https://www.vandijklab.org/news/we-are-at-neurips-2025-presenting-caddi monthly 0.5 2025-12-08 https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/d343e2b4-f1f8-413f-bd17-56de08c7bcc3/IMG_1013.jpg News - We are at NeurIPS 2025 presenting CaDDi! - Make it stand out Whatever it is, the way you tell your story online can make all the difference. https://www.vandijklab.org/news/we-are-at-iclr-2025-presenting-intelligence-at-the-edge-of-chaos monthly 0.5 2025-04-24 https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/607ab527-a641-4ae6-95b7-f1147500ff0c/image+%2835%29.png News - We are at ICLR 2025 presenting "Intelligence at the Edge of Chaos"! - Make it stand out Whatever it is, the way you tell your story online can make all the difference. https://www.vandijklab.org/news/c2s-scale-preprint-released monthly 0.5 2025-04-17 https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/1744915776747-FOQ5NP2DGXT6GN4F0TNN/C2S_V2_Scaling_Over_Figure.png News - C2S-Scale Preprint released! https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/1744915777923-QSU1YRT6V8OH4JLZZ17H/c2s_inputs_outputs.png News - C2S-Scale Preprint released! https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/1744915746285-13NRJBOPN2XXGJJUUG4E/scales_parallels.png News - C2S-Scale Preprint released! https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/1744915746701-LSS0M4BUQYRQYRE6TBUU/scaling.png News - C2S-Scale Preprint released! https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/1744915776598-0EZPTZ9WTQVU23XNLGYQ/c2s_spatial_task.png News - C2S-Scale Preprint released! https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/1744915777976-DDU9B059KWI0VYB5R88B/C2S_V2_Question_Answering_Biorender_Figure.png News - C2S-Scale Preprint released! https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/1744915744720-C9BNDKVRJLV84OMDO0GH/perturbation_setup.png News - C2S-Scale Preprint released! https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/1744915745387-NOKDZ9439W1M1PEEN8RC/perturbation_results.png News - C2S-Scale Preprint released! https://www.vandijklab.org/news/presentation-at-the-broad-institute monthly 0.5 2025-04-18 https://www.vandijklab.org/about-us daily 1.0 2025-10-23 https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/1565634262201-EO0RA1M4DOYBII6GT3CA/jackson-photo-ynews.jpg About Us https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/1565650801174-QBU9U1TSNUF11K2SDOPN/neurons_artificial_intelligence-1030x687.jpg About Us https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/1567526376871-5NE54QCP5JJUG5916J9C/van_dijk_lab.png About Us https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/12f036aa-75a2-4a7d-bcc8-89a76dc1ee79/ab_DNA-678x381.jpg About Us https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/1eed72dd-2c70-4b0c-9086-8b6d81ab1f90/c2s_inputs_outputs.png About Us - Cell2Sentence Cell2Sentence bridges transcriptomics and NLP by encoding scRNA‑seq profiles as “cell sentences” to fine‑tune LLMs for tasks like cell generation and annotation. ICML 2024. C2S‑Scale scales this framework to 27 billion parameters trained on a billion‑token multimodal corpus—achieving state‑of‑the‑art predictive and generative performance for complex, multicellular analyses. bioRxiv 2025 (Preprint). https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/a11c9ebb-8cc6-4dea-a005-816e3cb26609/Screenshot+2023-09-12+at+2.29.45+PM.jpg About Us - CINEMA-OT CINEMA‑OT applies causal inference with optimal transport to disentangle true treatment effects from confounders in single‑cell perturbation experiments, outperforming existing methods on both simulated and real data. It uncovers mechanisms behind impaired antiviral responses in airway organoids and chemokine‑driven immune recruitment in cytokine‑stimulated immune cells. Nature Methods 2023 https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/2a40d013-c520-4287-aa2a-e9816bd763b4/complexity_fig1_v5.png About Us - Intelligence at the Edge of Chaos By training LLMs on elementary cellular automata rules of varying complexity, we pinpoint a “sweet spot” of data complexity that maximizes downstream predictive and reasoning abilities. Our findings suggest that exposing models to appropriately complex patterns is key to unlocking emergent intelligence. ICLR 2025. https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/1554737275205-QE4T3TYZ264B6FGMY3VT/magic_small.png About Us - MAGIC MAGIC leverages Markov affinity–based graph diffusion to impute missing transcripts in single‑cell RNA‑seq data, effectively denoising dropout noise and restoring gene–gene relationships. In epithelial‑to‑mesenchymal transition analyses, MAGIC reveals a continuous spectrum of intermediate, stem‑like cell states and uncovers both established and novel regulatory interactions. Cell 2018 https://www.vandijklab.org/about daily 0.75 2019-04-08 https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/1554670695799-6QFNDOS0K38K1CI3WZCA/me_crop.jpg About me - David van Dijk PhD Machine Learning & Computational Biology https://www.vandijklab.org/talks daily 0.75 2019-04-21 https://www.vandijklab.org/publications daily 0.75 2026-01-14 https://www.vandijklab.org/contact-us daily 0.75 2025-04-18 https://www.vandijklab.org/projects daily 0.75 2026-01-14 https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/1744942004510-SNJHBCR65BI2B5YXOGMK/C2S_V2_Scaling_Over_Figure.png Projects https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/1744894503041-XDUZT0DJX81LLPGYL0MG/c2s_inputs_outputs.png Projects https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/1744894503988-0REOLVW5S1UYO2ICDOFW/cell_sentence_transform.png Projects 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difference. https://www.vandijklab.org/github daily 0.75 2025-04-18 https://www.vandijklab.org/c2s-scale daily 0.75 2025-04-17 https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/1744898945761-FONWT121JK1375XWTAEG/C2S_V2_Scaling_Over_Figure.png Cell2Sentence-Scale https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/1744898945061-F5ZN7PU0US3CUSPJEYZG/c2s_inputs_outputs.png Cell2Sentence-Scale https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/1744898946470-5OLL6ELW6KJR2YI6B752/c2s_spatial_task.png Cell2Sentence-Scale https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/1744898947413-5IWYWU4P3MZW33XQNDAT/C2S_V2_Question_Answering_Biorender_Figure.png Cell2Sentence-Scale https://images.squarespace-cdn.com/content/v1/5caa37fb9b8fe808f3fe1c6a/1744902095686-FE20D4RK6VVAUG0QJPSC/perturbation_results.png Cell2Sentence-Scale 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